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https://github.com/RYDE-WORK/lnp_ml.git
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- Updated ablation_summary.csv with full 6-variant comparison - Updated run_all.sh to run 6 variants (added BioT5 variants) - Added per-fold json artifacts (best_params/test_metrics/splits/history/summary) - Model weights (.pt) excluded per .gitignore
6.1 KiB
6.1 KiB
| 1 | variant | run_dir | size.mse_mean | size.mse_std | size.rmse_mean | size.rmse_std | size.mae_mean | size.mae_std | size.r2_mean | size.r2_std | delivery.mse_mean | delivery.mse_std | delivery.rmse_mean | delivery.rmse_std | delivery.mae_mean | delivery.mae_std | delivery.r2_mean | delivery.r2_std | pdi.accuracy_mean | pdi.accuracy_std | pdi.precision_mean | pdi.precision_std | pdi.recall_mean | pdi.recall_std | pdi.f1_mean | pdi.f1_std | ee.accuracy_mean | ee.accuracy_std | ee.precision_mean | ee.precision_std | ee.recall_mean | ee.recall_std | ee.f1_mean | ee.f1_std | toxic.accuracy_mean | toxic.accuracy_std | toxic.precision_mean | toxic.precision_std | toxic.recall_mean | toxic.recall_std | toxic.f1_mean | toxic.f1_std | biodist.kl_divergence_mean | biodist.kl_divergence_std | biodist.js_divergence_mean | biodist.js_divergence_std |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 2 | baseline | models/abl/baseline/20260623_205158 | 0.9567475188815514 | 0.569730318457903 | 0.9332903012787724 | 0.2927742004011441 | 0.5205680313666426 | 0.036274021744309826 | 0.024540561758398263 | 0.11631746182529404 | 0.8436653684732743 | 0.2182433415975543 | 0.9107461299632457 | 0.11919251331457457 | 0.598634821381456 | 0.05735289715081742 | 0.1443791660970296 | 0.1281061991656446 | 0.7357142857142857 | 0.049026810195176206 | 0.6759926072468357 | 0.05509185976342328 | 0.6963017219702202 | 0.057127965795130256 | 0.6808865768933052 | 0.056739009627821094 | 0.6492063492063491 | 0.05085561696381203 | 0.5942685237048638 | 0.05709593570250263 | 0.6220363794313374 | 0.07370705460979522 | 0.5954359329832487 | 0.0634519507679728 | 0.9511890595408049 | 0.016071213375949578 | 0.7617961570593149 | 0.0689235340767993 | 0.958294443004062 | 0.05613748087593979 | 0.8151453855878633 | 0.03136647604932657 | 0.31426474045100566 | 0.05350543992895652 | 0.07677535890897173 | 0.01482841183016674 |
| 3 | +moe | models/abl/moe/20260623_210356 | 0.9218076020079066 | 0.5523329895296802 | 0.9168921729394024 | 0.28480931377040175 | 0.5233201366247241 | 0.039438901131415294 | 0.055313166724018085 | 0.11161236452714787 | 0.7811412182145917 | 0.1931313144142769 | 0.8772192110406017 | 0.10783169291027488 | 0.5597036740534448 | 0.06056646385687513 | 0.20096652374105642 | 0.1381743563430634 | 0.7142857142857142 | 0.055498837260466956 | 0.653349764982509 | 0.06229638797862123 | 0.6734999158998424 | 0.06721815241332428 | 0.6578005134302398 | 0.06528497096446977 | 0.6396825396825395 | 0.06366049088938247 | 0.5816669819778402 | 0.0676118875849743 | 0.6116972992771311 | 0.08879084856683034 | 0.5837588579330147 | 0.07721106612480472 | 0.9489467380785851 | 0.014806201481902809 | 0.7433333333333333 | 0.03241594747641431 | 0.9731959208365742 | 0.007847570054979899 | 0.8123065675720541 | 0.03224418146822956 | 0.29566092272169336 | 0.07550231859418749 | 0.071707051956788 | 0.022439132651345492 |
| 4 | +llm_molt5 | models/abl/llm_molt5/20260623_211739 | 0.9566163841988022 | 0.5289173298099858 | 0.9407963546814515 | 0.2674296229232933 | 0.5268975412509194 | 0.05039567726957613 | -0.032432080846029186 | 0.25100982645757397 | 0.8564237969243796 | 0.1977046320203809 | 0.9196095850916804 | 0.10364365842581455 | 0.6248762457257531 | 0.06153017950577873 | 0.12560405672511385 | 0.10994742145993405 | 0.7158730158730158 | 0.06052595544424641 | 0.6602762315388166 | 0.06462720006787157 | 0.6845688458798613 | 0.07165699786547515 | 0.6644593079370945 | 0.06911892092212407 | 0.6476190476190476 | 0.05158119621991084 | 0.5931245694955715 | 0.06380277148311345 | 0.6190906000317766 | 0.07225474019863874 | 0.5940888890774098 | 0.0661558682406764 | 0.9456517189214969 | 0.022719466775221415 | 0.7526691729323307 | 0.07547321813694222 | 0.9553805490738341 | 0.055941822921307525 | 0.8043743537666569 | 0.04314896911685932 | 0.294527413864006 | 0.10192651728638547 | 0.07395607638617227 | 0.025932885166045156 |
| 5 | +llm_biot5 | models/abl/llm_biot5/20260623_225013 | 1.0067538623894792 | 0.5205158304025296 | 0.96913317320124 | 0.25987449853799555 | 0.5444608471417711 | 0.040902958350882444 | -0.09845689222974469 | 0.2507492349150189 | 0.8563212563473335 | 0.26578017641088525 | 0.9129535856189696 | 0.1511191809559604 | 0.5881890045467639 | 0.07043943218567686 | 0.1346837610260076 | 0.2032093070798247 | 0.7214285714285715 | 0.05495136308925004 | 0.6580776745142416 | 0.06877780914813574 | 0.6743633699902525 | 0.0715790564486541 | 0.6607298615852565 | 0.06888301131752778 | 0.6547619047619048 | 0.057010428558945926 | 0.5950896979756966 | 0.06396232527293311 | 0.6254189657214867 | 0.07822783760418099 | 0.5993737876362116 | 0.07019293425541405 | 0.9512455886532979 | 0.01815930794844806 | 0.7754970760233918 | 0.09057557500914719 | 0.9422435398841934 | 0.07573011723871058 | 0.8129287182827004 | 0.03251238236071497 | 0.22679653175048778 | 0.07137247467056843 | 0.054866335621809995 | 0.01765506187566907 |
| 6 | +both_molt5 | models/abl/both_molt5/20260624_002350 | 0.9642810483053024 | 0.555690014600843 | 0.9402335772104724 | 0.28326995709270125 | 0.5282418376387317 | 0.048170441970642804 | -0.008883709991662088 | 0.1913450489288403 | 0.801891094776063 | 0.18220205643295026 | 0.8899800006302908 | 0.09912967897743918 | 0.5887372173796929 | 0.0612901937191995 | 0.17880537334385976 | 0.12174784172665178 | 0.7325396825396825 | 0.04051507624793722 | 0.6694864144939896 | 0.05125867646022508 | 0.6907446822617079 | 0.058907119543823376 | 0.6747607601597044 | 0.05440981896386903 | 0.6365079365079365 | 0.05748355226105338 | 0.5820259594491293 | 0.07075806198131898 | 0.6082688248570601 | 0.08471623019407899 | 0.5814400954982754 | 0.07366890243489375 | 0.9556516869841453 | 0.017373786295358143 | 0.7654761904761904 | 0.05679457353274553 | 0.9767259384092415 | 0.009166871618238513 | 0.831532761930992 | 0.04919763950001062 | 0.22486089426269779 | 0.045328690570765884 | 0.05223158533717151 | 0.009495161673733467 |
| 7 | +both_biot5 | models/abl/both_biot5/20260624_015624 | 0.9081302997777905 | 0.5136450803217497 | 0.9141199639383836 | 0.2692860770761804 | 0.5133458284713402 | 0.04319170563122826 | 0.050279130594863726 | 0.14254606826389926 | 0.8019226249118218 | 0.16491413379339875 | 0.8908588101767234 | 0.09106703707892613 | 0.5784917580608503 | 0.04315723112464039 | 0.17889067221587332 | 0.09951788455210314 | 0.7150793650793652 | 0.03408081040251411 | 0.6557721476019204 | 0.043177655691081666 | 0.6793533277933066 | 0.04998713373151071 | 0.660105333753019 | 0.044135656309097604 | 0.6444444444444444 | 0.060837358402339045 | 0.591231020166536 | 0.07158423002562818 | 0.6249326720587225 | 0.08964169776063406 | 0.594285119491739 | 0.07762446019388265 | 0.9544840786978929 | 0.012127005670401548 | 0.7561904761904762 | 0.02972283149395665 | 0.976109814766802 | 0.006422363902381704 | 0.8255180784163084 | 0.028684876656301855 | 0.2767846108676604 | 0.09472632342725851 | 0.06619436643695288 | 0.02615132013321954 |