From f5eb0d3cf52d79a054294f8bd9455ff46e05cb2c Mon Sep 17 00:00:00 2001 From: leehk Date: Tue, 11 Feb 2025 11:49:37 +0800 Subject: [PATCH] First commit --- .gitignore | 194 ++ README.md | 15 + app/.gitkeep | 0 app/proto-docs/.env.template | 0 app/proto-docs/.gitignore | 201 ++ app/proto-docs/Makefile | 21 + app/proto-docs/README.md | 24 + app/proto-docs/data/.gitkeep | 0 app/proto-docs/docs/code_quality.md | 86 + app/proto-docs/docs/computer_setup.md | 101 + app/proto-docs/docs/documentation.md | 37 + app/proto-docs/docs/index.md | 41 + app/proto-docs/docs/logging.md | 26 + app/proto-docs/docs/virtual_environment.md | 113 + app/proto-docs/logs/.gitkeep | 0 app/proto-docs/mkdocs.yml | 46 + app/proto-docs/notebooks/.gitkeep | 0 app/proto-docs/poetry.lock | 2927 ++++++++++++++++++++ app/proto-docs/pyproject.toml | 39 + app/proto-docs/requirements.txt | 139 + app/proto-docs/src/proto_docs/__init__.py | 0 app/proto-docs/src/proto_docs/cli.py | 22 + app/proto-docs/src/proto_docs/logger.py | 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mode 100644 scripts/README.md diff --git a/.gitignore b/.gitignore new file mode 100644 index 0000000..6e1b270 --- /dev/null +++ b/.gitignore @@ -0,0 +1,194 @@ +## GitIgnore Template + +# Byte-compiled / optimized / DLL files +__pycache__/ +*.py[cod] +*$py.class + +# C extensions +*.so + +# Distribution / packaging +.Python +build/ +develop-eggs/ +dist/ +downloads/ +eggs/ +.eggs/ +lib/ +lib64/ +parts/ +sdist/ +var/ +wheels/ +*.egg-info/ +.installed.cfg +*.egg +MANIFEST + +# PyInstaller +# Usually these files are written by a python script from a template +# before PyInstaller builds the exe, so as to inject date/other infos into it. +*.manifest +*.spec + +# Installer logs +pip-log.txt +pip-delete-this-directory.txt + +# Unit test / coverage reports +htmlcov/ +.tox/ +.coverage +.coverage.* +.cache +nosetests.xml +coverage.xml +*.cover +.hypothesis/ +.pytest_cache/ + +# Translations +*.mo +*.pot + +# Django stuff: +*.log +local_settings.py +db.sqlite3 + +# Flask stuff: +instance/ +.webassets-cache + +# Scrapy stuff: +.scrapy + +# Sphinx documentation +docs/_build/ + +# PyBuilder +target/ + +# Jupyter Notebook +.ipynb_checkpoints + +# pyenv +.python-version + +# celery beat schedule file +celerybeat-schedule + +# SageMath parsed files +*.sage.py + +# Environments +.env +.venv +env/ +venv/ +ENV/ +env.bak/ +venv.bak/ + +# Spyder project settings +.spyderproject +.spyproject + +# Rope project settings +.ropeproject + +# mkdocs documentation +/site + +# mypy +.mypy_cache/ + + +## Node.js + +node_modules + +## OS specific + +## Linux ### +*~ + +# temporary files which can be created if a process still has a handle open of a deleted file +.fuse_hidden* + +# KDE directory preferences +.directory + +# Linux trash folder which might appear on any partition or disk +.Trash-* + +# .nfs files are created when an open file is removed but is still being accessed +.nfs* + +### macOS ### +# General +.DS_Store +.AppleDouble +.LSOverride + +# Icon must end with two \r +Icon + + +# Thumbnails +._* + +# Files that might appear in the root of a volume +.DocumentRevisions-V100 +.fseventsd +.Spotlight-V100 +.TemporaryItems +.Trashes +.VolumeIcon.icns +.com.apple.timemachine.donotpresent + +# Directories potentially created on remote AFP share +.AppleDB +.AppleDesktop +Network Trash Folder +Temporary Items +.apdisk + +### Windows ### +# Windows thumbnail cache files +Thumbs.db +Thumbs.db:encryptable +ehthumbs.db +ehthumbs_vista.db + +# Dump file +*.stackdump + +# Folder config file +[Dd]esktop.ini + +# Recycle Bin used on file shares +$RECYCLE.BIN/ + +# Windows Installer files +*.cab +*.msi +*.msix +*.msm +*.msp + +# Windows shortcuts +*.lnk + +### Additional Gitignore Stuff: +data/* +**/data/* +**/local/* +**/mlruns/* +**/mlruns +**/output/* +**/output/*.csv +!**/output/.gitkeep +!**/data/.gitkeep diff --git a/README.md b/README.md new file mode 100644 index 0000000..8c7869f --- /dev/null +++ b/README.md @@ -0,0 +1,15 @@ +## Important note: +No data or output should be uploaded to this repo. Please make use of .gitignore template in the root directory if you have folder/directory containing dataset. The content in folder/directory currently being ignored from git push are data/ and output/, recursively. + +## Configure Hooks + +If this is the first time you are using Repo with this Template you have to setup the Git Hooks dir. + +To set up the hooks dir globally run `git config --global core.hooksPath ./.hooks/` + +To set up the hooks for only this Repo run `git config core.hooksPath ./.hooks/` + +## Please enter your general Project description here + +## If you don't need all folder feel free to delete them + diff --git a/app/.gitkeep b/app/.gitkeep new file mode 100644 index 0000000..e69de29 diff --git a/app/proto-docs/.env.template b/app/proto-docs/.env.template new file mode 100644 index 0000000..e69de29 diff --git a/app/proto-docs/.gitignore b/app/proto-docs/.gitignore new file mode 100644 index 0000000..2bfd74f --- /dev/null +++ b/app/proto-docs/.gitignore @@ -0,0 +1,201 @@ +# Created by https://www.toptal.com/developers/gitignore/api/python,visualstudiocode +# Edit at https://www.toptal.com/developers/gitignore?templates=python,visualstudiocode + +### Python ### +# Byte-compiled / optimized / DLL files +__pycache__/ +*.py[cod] +*$py.class + +# C extensions +*.so + +# Distribution / packaging +.Python +build/ +develop-eggs/ +dist/ +downloads/ +eggs/ +.eggs/ +lib/ +lib64/ +parts/ +sdist/ +var/ +wheels/ +share/python-wheels/ +*.egg-info/ +.installed.cfg +*.egg +MANIFEST + +# PyInstaller +# Usually these files are written by a python script from a template +# before PyInstaller builds the exe, so as to inject date/other infos into it. +*.manifest +*.spec + +# Installer logs +pip-log.txt +pip-delete-this-directory.txt + +# Unit test / coverage reports +htmlcov/ +.tox/ +.nox/ +.coverage +.coverage.* +.cache +nosetests.xml +coverage.xml +*.cover +*.py,cover +.hypothesis/ +.pytest_cache/ +cover/ + +# Translations +*.mo +*.pot + +# Django stuff: +*.log +local_settings.py +db.sqlite3 +db.sqlite3-journal + +# Flask stuff: +instance/ +.webassets-cache + +# Scrapy stuff: +.scrapy + +# Sphinx documentation +docs/_build/ + +# PyBuilder +.pybuilder/ +target/ + +# Jupyter Notebook +.ipynb_checkpoints + +# IPython +profile_default/ +ipython_config.py + +# pyenv +# For a library or package, you might want to ignore these files since the code is +# intended to run in multiple environments; otherwise, check them in: +# .python-version + +# pipenv +# According to pypa/pipenv#598, it is recommended to include Pipfile.lock in version control. +# However, in case of collaboration, if having platform-specific dependencies or dependencies +# having no cross-platform support, pipenv may install dependencies that don't work, or not +# install all needed dependencies. +#Pipfile.lock + +# poetry +# Similar to Pipfile.lock, it is generally recommended to include poetry.lock in version control. +# This is especially recommended for binary packages to ensure reproducibility, and is more +# commonly ignored for libraries. +# https://python-poetry.org/docs/basic-usage/#commit-your-poetrylock-file-to-version-control +#poetry.lock + +# pdm +# Similar to Pipfile.lock, it is generally recommended to include pdm.lock in version control. +#pdm.lock +# pdm stores project-wide configurations in .pdm.toml, but it is recommended to not include it +# in version control. +# https://pdm.fming.dev/#use-with-ide +.pdm.toml + +# PEP 582; used by e.g. github.com/David-OConnor/pyflow and github.com/pdm-project/pdm +__pypackages__/ + +# Celery stuff +celerybeat-schedule +celerybeat.pid + +# SageMath parsed files +*.sage.py + +# Environments +.env +.venv +env/ +venv/ +ENV/ +env.bak/ +venv.bak/ + +# Spyder project settings +.spyderproject +.spyproject + +# Rope project settings +.ropeproject + +# mkdocs documentation +/site + +# mypy +.mypy_cache/ +.dmypy.json +dmypy.json + +# Pyre type checker +.pyre/ + +# pytype static type analyzer +.pytype/ + +# Cython debug symbols +cython_debug/ + +# PyCharm +# JetBrains specific template is maintained in a separate JetBrains.gitignore that can +# be found at https://github.com/github/gitignore/blob/main/Global/JetBrains.gitignore +# and can be added to the global gitignore or merged into this file. For a more nuclear +# option (not recommended) you can uncomment the following to ignore the entire idea folder. +#.idea/ + +### Python Patch ### +# Poetry local configuration file - https://python-poetry.org/docs/configuration/#local-configuration +poetry.toml + +# ruff +.ruff_cache/ + +# LSP config files +pyrightconfig.json + +### VisualStudioCode ### +.vscode/* +!.vscode/settings.json +!.vscode/tasks.json +!.vscode/launch.json +!.vscode/extensions.json +!.vscode/*.code-snippets + +# Local History for Visual Studio Code +.history/ + +# Built Visual Studio Code Extensions +*.vsix + +### VisualStudioCode Patch ### +# Ignore all local history of files +.history +.ionide + +data/* +!data/.gitkeep + +logs/* +!logs/.gitkeep + +# End of https://www.toptal.com/developers/gitignore/api/python,visualstudiocode diff --git a/app/proto-docs/Makefile b/app/proto-docs/Makefile new file mode 100644 index 0000000..d4a9599 --- /dev/null +++ b/app/proto-docs/Makefile @@ -0,0 +1,21 @@ +lint-check: + @poetry run ruff check src/ tests/ + +lint-fix: + @poetry run ruff --fix src/ tests/ + +format-check: + @poetry run black --check --diff src/ tests/ + +format-fix: + @poetry run black src/ tests/ + +statictypes-check: + @poetry run pyright src/ tests/ + +run-tests: + @poetry run pytest + +complete-check: lint-check format-check statictypes-check run-tests +complete-fix: lint-fix format-fix + diff --git a/app/proto-docs/README.md b/app/proto-docs/README.md new file mode 100644 index 0000000..21464c2 --- /dev/null +++ b/app/proto-docs/README.md @@ -0,0 +1,24 @@ +# Introduction + +This repository is used as a prototype template for setting up new Python project. + +The documentation in `docs` contains the recommended practices. + +# Installation + +## Requirements + +- Install [pyenv](https://github.com/pyenv/pyenv#installation) to manage the Python versions +- Install [Poetry](https://python-poetry.org/docs/#installation) to manage the dependencies + +Run the following command in this project root folder to install the dependencies: + +```bash +poetry install +``` + +Or you can install the dependencies with `pip`: + +```bash +pip install -r requirements.txt +``` diff --git a/app/proto-docs/data/.gitkeep b/app/proto-docs/data/.gitkeep new file mode 100644 index 0000000..e69de29 diff --git a/app/proto-docs/docs/code_quality.md b/app/proto-docs/docs/code_quality.md new file mode 100644 index 0000000..9a313dd --- /dev/null +++ b/app/proto-docs/docs/code_quality.md @@ -0,0 +1,86 @@ +# Formatting + +`Black` is recommended to format the Python files. It is a highly opinionated formatter that follows PEP8. + +## Typical Workflow + +1. Add [`black`](https://pypi.org/project/black/) python library as dev dependency in the virtual environment. Pin down the version if necessary. + + === "Poetry" + + ```bash + poetry add -G dev black + ``` + + === "Conda" + + ```bash + conda install black + ``` + +2. Install `Black` vscode extension as specified in [Computer Setup](./0_computer_setup.md) + +3. Enable format on save in your editor + +## Additional settings +`Black` can be customized through `pyproject.toml` + +`Black` settings are explained in [here](https://black.readthedocs.io/en/stable/guides/using_black_with_other_tools.html). + +# Linting + +`Ruff` is recommended to lint the Python files. + +## Typical Workflow + +1. Add [`ruff`](https://pypi.org/project/ruff/) python library as dev dependency in the virtual environment. Pin down the version if necessary. + + === "Poetry" + + ```bash + poetry add -G dev ruff + ``` + + === "Conda" + + ```bash + conda install ruff + ``` + +2. Install `Ruff` vscode extension as specified in [Computer Setup](./0_computer_setup.md) + +## Additional setting + +`Ruff` can be customized through `pyproject.toml` + +`Ruff` settings are explained in [here](https://beta.ruff.rs/docs/configuration/). + + +# Type checking + +`Pyright` is recommended to type check all python files in the project. + +## Typical Worklow + +1. Add [`pyright`](https://pypi.org/project/pyright/) python library as dev dependency in the virtual environment. Pin down the version if necessary. + + === "Poetry" + + ```bash + poetry add -G dev pyright + ``` + + === "Conda" + + ```bash + conda install pyright + ``` + +2. Install `Python` vscode extension as specified in [Computer Setup](./0_computer_setup.md) + + +## Additional setting + +`Pyright` can be customized through `pyproject.toml` + +`Pyright` settings are explained in [here](https://github.com/microsoft/pyright/blob/main/docs/configuration.md) \ No newline at end of file diff --git a/app/proto-docs/docs/computer_setup.md b/app/proto-docs/docs/computer_setup.md new file mode 100644 index 0000000..8e63dfb --- /dev/null +++ b/app/proto-docs/docs/computer_setup.md @@ -0,0 +1,101 @@ +# Visual Studio Code setup + +1. Recommended vscode extensions for Python Development + + - [`Python`](https://marketplace.visualstudio.com/items?itemName=ms-python.python) + - [`Black`](https://marketplace.visualstudio.com/items?itemName=ms-python.black-formatter) + - [`Ruff`](https://marketplace.visualstudio.com/items?itemName=charliermarsh.ruff) + - [`Jupyter`](https://marketplace.visualstudio.com/items?itemName=ms-toolsai.jupyter) + - [`autoDocstring`](https://marketplace.visualstudio.com/items?itemName=njpwerner.autodocstring) + - [`Even Better TOML`](https://marketplace.visualstudio.com/items?itemName=tamasfe.even-better-toml) + - [`YAML`](https://marketplace.visualstudio.com/items?itemName=redhat.vscode-yaml) + - [`Remote Development`](https://marketplace.visualstudio.com/items?itemName=ms-vscode-remote.vscode-remote-extensionpack) + - [`Docker`](https://marketplace.visualstudio.com/items?itemName=ms-azuretools.vscode-docker) + - [`GitLens`](https://marketplace.visualstudio.com/items?itemName=eamodio.gitlens) + +2. Enable strict typehints in the setting + + ```json + { + "python.analysis.typeCheckingMode": "strict", + "python.analysis.inlayHints.pytestParameters": true, + "python.analysis.inlayHints.functionReturnTypes": true + } + ``` + +3. Format using `Black` and Lint using `Ruff` on save + + !!! warning + + Set all these settings to false for existing projects that never use `Black` or `Ruff` before. + + ```json + { + "[python]": { + "editor.defaultFormatter": "ms-python.black-formatter", + "editor.formatOnSave": true, + "editor.codeActionsOnSave": { + "source.organizeImports": true, + "source.fixAll": true + } + }, + "python.formatting.provider": "none", + "notebook.formatOnSave.enabled": true + } + ``` + +4. Test using `pytest` + + ```json + { + "python.testing.pytestEnabled": true, + "python.testing.pytestArgs": ["tests"] + } + ``` + +5. Use `google` documentation style + + ```json + { + "autoDocstring.docstringFormat": "google" + } + ``` + +6. Guides from the internet + + - [Python in Visual Studio](https://code.visualstudio.com/docs/languages/python) + +# Virtual Environment Management + +Pyenv and Poetry is typically used for managing Python package, while Conda is more popular in Data Science project. + +Both features virtual environment creation, but Poetry offers finer details on installing packages for production or development, publishing the Python package. + +1. **Both** [`Pyenv`](https://github.com/pyenv/pyenv) **AND** [`Poetry`](https://github.com/python-poetry/poetry/) + + !!! note "Pyenv Installation" + Pyenv installation may requires executing more than one line in terminal, you also need to set your shell profile (`.zshrc` or `.bash_profile`). + + Read carefully [here](https://github.com/pyenv/pyenv#installation) + + !!! note "Poetry Installation" + + If you have old Poetry version (<1.2), you need to uninstall it and install the latest version. + +2. **Either** [Conda `Miniforge` **OR** `Mambaforge`](https://github.com/conda-forge/miniforge) + +3. [Docker](https://www.docker.com/) + +# Gitignore + +Download gitignore template from [gitignore.io](https://www.toptal.com/developers/gitignore/). + +[`Python` and `visualstudiocode`](https://www.toptal.com/developers/gitignore/api/python,visualstudiocode) are recommended arguments for starter. + +## Alternative Way + +You may create command line function `gi` to download gitignore file. Follow the guide in [here](https://docs.gitignore.io/install/command-line). Then, you can the command in the project root folder. + +```bash +gi python,visualstudiocode >> .gitignore +``` diff --git a/app/proto-docs/docs/documentation.md b/app/proto-docs/docs/documentation.md new file mode 100644 index 0000000..5130b10 --- /dev/null +++ b/app/proto-docs/docs/documentation.md @@ -0,0 +1,37 @@ +# Introduction + +[`MkDocs`](https://www.mkdocs.org/) is a static site generator that's geared towards building project documentation. Documentation source files are written in `Markdown`, and configured with a single `YAML` configuration file. + +# Installation + +`MkDocs` is a Python library and there are also some extras recommended plugins to be installed. + +1. [`mkdocs-material`](https://pypi.org/project/mkdocs-material/) - Theme +2. [`mkdocstrings`](https://pypi.org/project/mkdocstrings/) - Auto generate documentation from docstrings +3. [`mkdocs-jupyter`](https://pypi.org/project/mkdocs-jupyter/) - Embed Jupyter notebook in the documentation + +=== "Poetry" + + ```bash + poetry add -G doc mkdocs mkdocs-material "mkdocstrings[python]" mkdocs-jupyter + ``` + +=== "Conda" + + ```bash + conda install mkdocs mkdocs-material mkdocstrings mkdocs-jupyter + ``` + +# Workflow + +1. Install mkdocs and the plugins as above + +2. Run `mkdocs new .` in the project root folder. It will create `mkdocs.yml` and `docs` folder + +3. Edit `mkdocs.yml` to configure the site + +4. Write the documentation in `docs` folder + +# References: + +- [MkDocs docs](https://www.mkdocs.org/) diff --git a/app/proto-docs/docs/index.md b/app/proto-docs/docs/index.md new file mode 100644 index 0000000..c6b432f --- /dev/null +++ b/app/proto-docs/docs/index.md @@ -0,0 +1,41 @@ +# Introduction + +This documentation contains Python recommended practice. It is intended to be used as a reference for Python developers. + +## TODO Project: + +1. Deploy this documentation to Azure Static Web Apps. Set it private for Evonik users and ensure the url page is fixed so it is easy to be share and bookmarked. +2. Create Python template with [`cookiecutter`](https://cookiecutter.readthedocs.io/en/latest/) and possibly [`cruft`](https://cruft.github.io/cruft/) + + References: + + - [Introducing a project template for modern Python packages](https://blog.wolt.com/engineering/2022/08/11/project-template-for-modern-python-packages/) + +## TODO Documentation Contents: + +1. Dockerize the project + + References: + + - https://pythonspeed.com/docker/ + +2. Setup environment variables thorugh `.env` +3. CI / CD with Azure Pipelines +4. Testing with pytest, coverage, mock, and tox + + References: + + - https://cjolowicz.github.io/posts/hypermodern-python-02-testing/ + +5. Makefile / pre-commit + + References: + + - https://earthly.dev/blog/python-makefile/ + - https://pre-commit.com/ + +6. Logging with structlog instead? + + References: + + - https://www.structlog.org/en/stable/ diff --git a/app/proto-docs/docs/logging.md b/app/proto-docs/docs/logging.md new file mode 100644 index 0000000..dda656b --- /dev/null +++ b/app/proto-docs/docs/logging.md @@ -0,0 +1,26 @@ +# Introduction + +Logging is a very important part of any application. It allows you to see what is happening in your application, and is especially useful when debugging. + +Logging is already built in `Python` though `logging` library, and we may add `rich` library to make it more beautiful. + +=== "Poetry" + + ```bash + poetry add rich + ``` + +=== "Conda" + + ```bash + conda install rich + ``` + +There are several ways to write logging configuration. You can specify it with `yaml` file, `ini` file, `json` file, Python `dict` or simply as Python code. + +If [rich handler](https://rich.readthedocs.io/en/stable/logging.html) is used, you can only write the configuration as Python code. + +# References: + +- [Logging for ML Systems](https://madewithml.com/courses/mlops/logging/) +- [Python Logging Guide – Best Practices and Hands-on Examples](https://coralogix.com/blog/python-logging-best-practices-tips/) diff --git a/app/proto-docs/docs/virtual_environment.md b/app/proto-docs/docs/virtual_environment.md new file mode 100644 index 0000000..79329c7 --- /dev/null +++ b/app/proto-docs/docs/virtual_environment.md @@ -0,0 +1,113 @@ +# Pyenv and Poetry + +Pyenv is meant to manage multiple Python versions installed in the computer. It allows you to download different Python versions. You can set a global Python version and a different local Python version for a specific project, so when you enter that directory, the Python version is automatically switched to the one you set. + +Poetry is meant to manage virtual environment of a Python project. Poetry does not have a way to download Python specific version needed in a project, so it requires Pyenv to provide one. + +## Typical Workflow + +You need to replace `` and `` based on your needs. For example, you may set `` to `my-project` and `` to `3.11.3`. + +### New Project + +1. Decide which Python version should be used for the new project. + +2. Ensure you have the Python version needed in the computer. You may check it through `pyenv versions` + + If it is not installed yet, you may run `pyenv install ` in the terminal. + + !!! note + + You can also check installable Python list by running `pyenv install --list` + + +3. Create the new project folder by running `poetry new --src ` and change directory to the project folder `cd ` + +4. Now set the Python version locally `pyenv local ` + +5. Ensure Python version requirement in `pyproject.toml` satisfies Python version specified in the previous step + +6. Set Poetry to create the virtual environment and prefer active Python in the path + ``` + poetry config virtualenvs.in-project true --local + poetry config virtualenvs.prefer-active-python true --local + ``` + + !!! note + + `in-project` is needed to ensure the virtual environment folder `.venv` is created in the project root folder. This is useful when you want find this folder easily during docker multi-stage build. + + `prefer-active-python` is needed to ensure Poetry uses the Python version specified in the previous step. + + You can also set the configuration globally by replacing `--local` with `--global`. This is useful when you want to use the same configuration for all projects. + +7. Create the Python virtual environment by running `poetry install` + +8. Activate the virtual environment by running `poetry shell` + +9. You can specify third-party dependencies with `poetry add` ([doc here](https://python-poetry.org/docs/cli/#add)) in the terminal or directly edit `pyproject.toml` + +### Convert Existing Project + +!!! tip + + It is usually unnecessary to convert existing Python virtual environment manager to Poetry if you already have one. However, if you want to convert it, you can follow the steps below. + +It follows the same steps above, except in creating project folder since you already existing one. So instead of running `poetry new --src `, run `poetry init --no-interaction --python `. + +- References: + + - [Pyenv docs](https://github.com/pyenv/pyenv) + - [Poetry docs](https://python-poetry.org/docs/) + +# Conda or Mamba + +## Typical Workflow + +You need to replace ``, ``, and `` based on your needs. For example, you may set `` to `my-project`, `` to `3.11.3`, and `` to `my-env`. + +If `mamba` is installed, replace `conda` command with `mamba` for faster third-party packages installation. + +### New Project + +1. Create new folder `mkdir && cd ` + +2. Specify the Python virtual environment requirements by creating `environment.yml` file in project root folder + + ```yaml + name: + channels: + - conda-forge + dependencies: + - python= + - pandas=2.0 + - ... + ``` +3. Create Python virtual environment and install third party dependencies by running `conda env create -f environment.yml` + +4. Activate the environment by running `conda activate ` + +5. You can specify third-party dependencies with `conda install` ([doc here](https://docs.conda.io/projects/conda/en/latest/user-guide/tasks/manage-pkgs.html)) in the terminal or directly edit `environment.yml` + +- References: + + - [Conda docs](https://docs.conda.io/projects/conda/en/latest/user-guide/index.html) + +### Convert Existing Project + +!!! tip + + It is usually unnecessary to convert existing Python virtual environment manager to Conda if you already have one. However, if you want to convert it, you can follow the steps below. + +It follows the same steps above, except in creating project folder since you already existing one. You may freeze the existing dependencies through `pip freeze > requirements.txt` and create `environment.yml` file with the following content: + +```yaml +name: +channels: + - conda-forge +dependencies: + - python= + - pip + - pip: + - -r requirements.txt +``` \ No newline at end of file diff --git a/app/proto-docs/logs/.gitkeep b/app/proto-docs/logs/.gitkeep new file mode 100644 index 0000000..e69de29 diff --git a/app/proto-docs/mkdocs.yml b/app/proto-docs/mkdocs.yml new file mode 100644 index 0000000..16546d3 --- /dev/null +++ b/app/proto-docs/mkdocs.yml @@ -0,0 +1,46 @@ +site_name: Project Docs + +nav: + - Home: index.md + - Computer Setup: computer_setup.md + - Virtual Environment: virtual_environment.md + - Code Quality: code_quality.md + - Logging: logging.md + - Documentation: documentation.md + +plugins: + - search + - mkdocstrings + - mkdocs-jupyter: + execute: false + include_source: true + +watch: + - src/proto_docs + +theme: + name: material + features: + - navigation.top + 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+mkdocstrings[python]==0.21.2 ; python_version >= "3.11" and python_version < "3.12" +mypy-extensions==1.0.0 ; python_version >= "3.11" and python_version < "3.12" +nbclassic==1.0.0 ; python_version >= "3.11" and python_version < "3.12" +nbclient==0.7.4 ; python_version >= "3.11" and python_version < "3.12" +nbconvert==7.4.0 ; python_version >= "3.11" and python_version < "3.12" +nbformat==5.8.0 ; python_version >= "3.11" and python_version < "3.12" +nest-asyncio==1.5.6 ; python_version >= "3.11" and python_version < "3.12" +nodeenv==1.8.0 ; python_version >= "3.11" and python_version < "3.12" +notebook-shim==0.2.3 ; python_version >= "3.11" and python_version < "3.12" +notebook==6.5.4 ; python_version >= "3.11" and python_version < "3.12" +packaging==23.1 ; python_version >= "3.11" and python_version < "3.12" +pandocfilters==1.5.0 ; python_version >= "3.11" and python_version < "3.12" +parso==0.8.3 ; python_version >= "3.11" and python_version < "3.12" +pathspec==0.11.1 ; python_version >= "3.11" and python_version < "3.12" +pexpect==4.8.0 ; python_version >= "3.11" and python_version < "3.12" and sys_platform != "win32" +pickleshare==0.7.5 ; python_version >= "3.11" and python_version < "3.12" +platformdirs==3.5.1 ; python_version >= "3.11" and python_version < "3.12" +pluggy==1.0.0 ; python_version >= "3.11" and python_version < "3.12" +prometheus-client==0.16.0 ; python_version >= "3.11" and python_version < "3.12" +prompt-toolkit==3.0.38 ; python_version >= "3.11" and python_version < "3.12" +psutil==5.9.5 ; python_version >= "3.11" and python_version < "3.12" +ptyprocess==0.7.0 ; python_version >= "3.11" and python_version < "3.12" and os_name != "nt" or python_version >= "3.11" and python_version < "3.12" and sys_platform != "win32" +pure-eval==0.2.2 ; python_version >= "3.11" and python_version < "3.12" +pycparser==2.21 ; python_version >= "3.11" and python_version < "3.12" +pygments==2.15.1 ; python_version >= "3.11" and python_version < "3.12" +pymdown-extensions==10.0.1 ; python_version >= "3.11" and python_version < "3.12" +pyproject-api==1.5.1 ; python_version >= "3.11" and python_version < "3.12" +pyright==1.1.308 ; python_version >= "3.11" and python_version < "3.12" +pyrsistent==0.19.3 ; python_version >= "3.11" and python_version < "3.12" +pytest-cov==4.0.0 ; python_version >= "3.11" and python_version < "3.12" +pytest-mock==3.10.0 ; python_version >= "3.11" and python_version < "3.12" +pytest==7.3.1 ; python_version >= "3.11" and python_version < "3.12" +python-dateutil==2.8.2 ; python_version >= "3.11" and python_version < "3.12" +python-json-logger==2.0.7 ; python_version >= "3.11" and python_version < "3.12" +pywin32==306 ; sys_platform == "win32" and platform_python_implementation != "PyPy" and python_version >= "3.11" and python_version < "3.12" +pywinpty==2.0.10 ; python_version >= "3.11" and python_version < "3.12" and os_name == "nt" +pyyaml-env-tag==0.1 ; python_version >= "3.11" and python_version < "3.12" +pyyaml==6.0 ; python_version >= "3.11" and python_version < "3.12" +pyzmq==25.0.2 ; python_version >= "3.11" and python_version < "3.12" +qtconsole==5.4.3 ; python_version >= "3.11" and python_version < "3.12" +qtpy==2.3.1 ; python_version >= "3.11" and python_version < "3.12" +regex==2023.5.5 ; python_version >= "3.11" and python_version < "3.12" +requests==2.30.0 ; python_version >= "3.11" and python_version < "3.12" +rfc3339-validator==0.1.4 ; python_version >= "3.11" and python_version < "3.12" +rfc3986-validator==0.1.1 ; python_version >= "3.11" and python_version < "3.12" +rich==13.3.5 ; python_version >= "3.11" and python_version < "3.12" +ruff==0.0.267 ; python_version >= "3.11" and python_version < "3.12" +send2trash==1.8.2 ; python_version >= "3.11" and python_version < "3.12" +setuptools==67.7.2 ; python_version >= "3.11" and python_version < "3.12" +shellingham==1.5.0.post1 ; python_version >= "3.11" and python_version < "3.12" +six==1.16.0 ; python_version >= "3.11" and python_version < "3.12" +sniffio==1.3.0 ; python_version >= "3.11" and python_version < "3.12" +soupsieve==2.4.1 ; python_version >= "3.11" and python_version < "3.12" +stack-data==0.6.2 ; python_version >= "3.11" and python_version < "3.12" +terminado==0.17.1 ; python_version >= "3.11" and python_version < "3.12" +tinycss2==1.2.1 ; python_version >= "3.11" and python_version < "3.12" +toml==0.10.2 ; python_version >= "3.11" and python_version < "3.12" +tornado==6.3.2 ; python_version >= "3.11" and python_version < "3.12" +tox==4.5.1 ; python_version >= "3.11" and python_version < "3.12" +traitlets==5.9.0 ; python_version >= "3.11" and python_version < "3.12" +typer[all]==0.9.0 ; python_version >= "3.11" and python_version < "3.12" +typing-extensions==4.5.0 ; python_version >= "3.11" and python_version < "3.12" +uri-template==1.2.0 ; python_version >= "3.11" and python_version < "3.12" +urllib3==2.0.2 ; python_version >= "3.11" and python_version < "3.12" +virtualenv==20.23.0 ; python_version >= "3.11" and python_version < "3.12" +watchdog==3.0.0 ; python_version >= "3.11" and python_version < "3.12" +wcwidth==0.2.6 ; python_version >= "3.11" and python_version < "3.12" +webcolors==1.13 ; python_version >= "3.11" and python_version < "3.12" +webencodings==0.5.1 ; python_version >= "3.11" and python_version < "3.12" +websocket-client==1.5.1 ; python_version >= "3.11" and python_version < "3.12" +widgetsnbextension==4.0.7 ; python_version >= "3.11" and python_version < "3.12" diff --git a/app/proto-docs/src/proto_docs/__init__.py b/app/proto-docs/src/proto_docs/__init__.py new file mode 100644 index 0000000..e69de29 diff --git a/app/proto-docs/src/proto_docs/cli.py b/app/proto-docs/src/proto_docs/cli.py new file mode 100644 index 0000000..a7dcdcb --- /dev/null +++ b/app/proto-docs/src/proto_docs/cli.py @@ -0,0 +1,22 @@ +from typing import Annotated + +import typer +from rich import print + +# logger = logging.getLogger(__name__) +from proto_docs.logger import logger + +app = typer.Typer() + + +@app.callback() +def main(): + logger.debug("Calling main() function") + logger.debug("Exiting main() function") + + +@app.command() +def commander_1(arg_1: Annotated[int, typer.Option()] = 1): + logger.info("Calling commander_1 function") + print(f"Another command with {arg_1=}") + logger.info("Exiting commander_1 function") diff --git a/app/proto-docs/src/proto_docs/logger.py b/app/proto-docs/src/proto_docs/logger.py new file mode 100644 index 0000000..1423672 --- /dev/null +++ b/app/proto-docs/src/proto_docs/logger.py @@ -0,0 +1,44 @@ +import logging +import logging.config +import logging.handlers +from pathlib import Path + +from rich.logging import RichHandler + +BASE_DIR = Path(__file__).resolve().parent.parent.parent.absolute() +LOGS_DIR = Path(BASE_DIR, "logs") +LOGS_DIR.mkdir(parents=True, exist_ok=True) + + +logger = logging.getLogger() +logger.setLevel(logging.DEBUG) + +# Create handlers +console_handler = RichHandler(markup=True) +console_handler.setLevel(logging.DEBUG) +info_handler = logging.handlers.RotatingFileHandler( + filename=Path(LOGS_DIR, "info.log"), + maxBytes=10485760, # 1 MB + backupCount=10, +) +info_handler.setLevel(logging.INFO) +error_handler = logging.handlers.RotatingFileHandler( + filename=Path(LOGS_DIR, "error.log"), + maxBytes=10485760, # 1 MB + backupCount=10, +) +error_handler.setLevel(logging.ERROR) + +# Create formatters +minimal_formatter = logging.Formatter(fmt="%(message)s") +detailed_formatter = logging.Formatter( + fmt="%(levelname)s %(asctime)s [%(name)s:%(filename)s:%(funcName)s:%(lineno)d]\n%(message)s\n" +) + +# Hook it all up +console_handler.setFormatter(fmt=minimal_formatter) +info_handler.setFormatter(fmt=detailed_formatter) +error_handler.setFormatter(fmt=detailed_formatter) +logger.addHandler(hdlr=console_handler) +logger.addHandler(hdlr=info_handler) +logger.addHandler(hdlr=error_handler) diff --git a/app/proto-docs/tests/__init__.py b/app/proto-docs/tests/__init__.py new file mode 100644 index 0000000..e69de29 diff --git a/data/.gitkeep b/data/.gitkeep new file mode 100644 index 0000000..e69de29 diff --git a/doc/.gitkeep b/doc/.gitkeep new file mode 100644 index 0000000..e69de29 diff --git a/doc/README.md b/doc/README.md new file mode 100644 index 0000000..479c10a --- /dev/null +++ b/doc/README.md @@ -0,0 +1 @@ +## save here your general documentation e.g. docs received from customer, architecture, components, mockups, ui sketches \ No newline at end of file diff --git a/etc/.gitkeep b/etc/.gitkeep new file mode 100644 index 0000000..e69de29 diff --git a/infrastructure/.gitkeep b/infrastructure/.gitkeep new file mode 100644 index 0000000..e69de29 diff --git a/infrastructure/README.md b/infrastructure/README.md new file mode 100644 index 0000000..65d9ad1 --- /dev/null +++ b/infrastructure/README.md @@ -0,0 +1 @@ +## save here your infrastructure as code e.g. terraform or azure services \ No newline at end of file diff --git a/notebooks/.gitkeep b/notebooks/.gitkeep new file mode 100644 index 0000000..e69de29 diff --git a/notebooks/README.md b/notebooks/README.md new file mode 100644 index 0000000..b229ff7 --- /dev/null +++ b/notebooks/README.md @@ -0,0 +1 @@ +## save here all your jupyter notebooks \ No newline at end of file diff --git a/pipelines/.gitkeep b/pipelines/.gitkeep new file mode 100644 index 0000000..e69de29 diff --git a/pipelines/README.md b/pipelines/README.md new file mode 100644 index 0000000..88d8f5e --- /dev/null +++ b/pipelines/README.md @@ -0,0 +1,19 @@ +# Pipelines + +## Global Pipeline Templates + +To use the global pipeline templates, you simply have to add the repo as a resource and reference the template like this: + +```yaml +## we need to reference the Template Repo here +resources: + repositories: + - repository: pipeline-templates + type: git + name: pipeline-templates + ref: refs/tags/v1.0 # Tagged Version of Templates +# ... +- template: pipelines/template_build.yml@pipeline-templates + parameters: + # ... +``` diff --git a/pipelines/templates/template_test.yml b/pipelines/templates/template_test.yml new file mode 100644 index 0000000..af4d949 --- /dev/null +++ b/pipelines/templates/template_test.yml @@ -0,0 +1,56 @@ +parameters: + - name: projectName + type: string + - name: packageName + type: string + - name: workingDirectory + type: string + +jobs: + - job: Build + timeoutInMinutes: 120 + pool: + vmImage: "ubuntu-latest" + variables: + PYTHON_VERSION: 3.9 + POETRY_VERSION: 1.4.2 + + + steps: + - task: UsePythonVersion@0 + inputs: + versionSpec: ${{ variables.PYTHON_VERSION }} + - checkout: self + fetchDepth: 1 + displayName: "Checkout repo" + - script: pip install poetry==${{ variables.POETRY_VERSION }} pytest-azurepipelines + displayName: "Install pipeline dependencies" + - script: poetry install + displayName: "Setup environment using Poetry" + workingDirectory: ${{ parameters.workingDirectory }} + - script: make lint-check + displayName: "Lint check using Ruff" + workingDirectory: ${{ parameters.workingDirectory }} + - script: make format-check + displayName: "Format check using Black" + workingDirectory: ${{ parameters.workingDirectory }} + - script: make statictypes-check + displayName: "Static types check using Pyright" + workingDirectory: ${{ parameters.workingDirectory }} + - script: | + poetry run pytest --junitxml=results.xml --cov=${{ parameters.packageName }} --cov-report xml + displayName: "Execute unit tests using Pytest" + workingDirectory: ${{ parameters.workingDirectory }} + - task: PublishTestResults@2 + displayName: "upload Test Results" + condition: succeededOrFailed() + inputs: + testResultsFormat: "JUnit" + testResultsFiles: "$(System.DefaultWorkingDirectory)/${{ parameters.workingDirectory }}/results.xml" + testRunTitle: "${{ parameters.projectName }} | $(Build.SourceVersionMessage)/$(Build.BuildId)" + - task: PublishCodeCoverageResults@1 + displayName: "Upload code coverage Results" + inputs: + codeCoverageTool: 'Cobertura' + summaryFileLocation: "$(System.DefaultWorkingDirectory)/${{ parameters.workingDirectory }}/coverage.xml" + pathToSources: $(System.DefaultWorkingDirectory)/${{ parameters.workingDirectory }}/src/ diff --git a/scripts/README.md b/scripts/README.md new file mode 100644 index 0000000..27639c4 --- /dev/null +++ b/scripts/README.md @@ -0,0 +1 @@ +## save all your scripts that do not fit into the the app folder e.g. you generate data only for one time \ No newline at end of file